{"id":76272,"library":"hadoop-bam","title":"Hadoop-BAM","description":"A Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework.","status":"active","version":"7.10.0","language":"java","source_language":null,"source_url":"https://github.com/HadoopGenomics/Hadoop-BAM","tags":["bioinformatics","hadoop","bam","mapreduce"],"install":[{"cmd":"<dependency>\n  <groupId>org.seqdoop</groupId>\n  <artifactId>hadoop-bam</artifactId>\n  <version>7.10.0</version>\n</dependency>","lang":"xml","label":"Maven"},{"cmd":"implementation 'org.seqdoop:hadoop-bam:7.10.0'","lang":"groovy","label":"Gradle"}],"dependencies":[],"imports":[{"symbol":"BAMInputFormat","correct":"org.seqdoop.hadoop_bam.BAMInputFormat"}],"quickstart":{"code":"import org.seqdoop.hadoop_bam.BAMInputFormat;\nimport org.apache.hadoop.conf.Configuration;\nimport org.apache.hadoop.fs.Path;\nimport org.apache.hadoop.mapreduce.Job;\n\npublic class Example {\n    public static void main(String[] args) throws Exception {\n        Job job = Job.getInstance(new Configuration());\n        BAMInputFormat.addInputPath(job, new Path(\"input.bam\"));\n    }\n}","lang":"java","description":"Configures a Hadoop job to read BAM files using Hadoop-BAM."},"warnings":[],"env_vars":null,"search_vec":"'bam':3,23 'bioinformat':14,21 'common':13 'file':11 'format':15 'framework':20 'hadoop':2,18,22 'hadoop-bam':1 'java':5 'librari':6 'manipul':9 'mapreduc':19,24 'use':16","created_at":"2026-06-17T19:26:43.713784+00:00","updated_at":"2026-06-17T19:26:43.713784+00:00","problems":[],"ecosystem":"maven","meta_description":null,"install_score":null,"quickstart_score":null,"quickstart_tag":null,"pypi_latest":null,"cli_name":null,"cli_version":null,"type":"library","homepage":"http://sourceforge.net/projects/hadoop-bam/","github":"https://github.com/HadoopGenomics/Hadoop-BAM","docs":"https://appdoc.app/artifact/org.seqdoop/hadoop-bam/","changelog":null,"pypi":null,"npm":null,"openapi_spec":null,"status_page":null,"smithery":null,"categories":["networking"],"base_url":null,"auth_type":null,"provenance":{"verified_status":null,"verified_at":null,"last_verified":"2026-06-17","next_check":"2026-12-14","install_tag":null}}