{"id":2010,"slug":"bio-mcp/bio-mcp-bwa","name":"BWA (Burrows-Wheeler Aligner)","description":"An MCP server for the BWA sequence alignment tool.","category":"other","github":"https://github.com/bio-mcp/bio-mcp-bwa","homepage":"","server_url":"","transport":null,"install":[{"cmd":"pip install -e","imports":[]}],"tools":[{"name":"bwa_index","description":"Create an index for a reference genome."},{"name":"bwa_mem","description":"Align reads using the BWA-MEM algorithm."},{"name":"bwa_aln","description":"Find SA coordinates with the BWA-backtrack algorithm."},{"name":"bwa_samse","description":"Generate single-end alignments in SAM format."},{"name":"bwa_sampe","description":"Generate paired-end alignments in SAM format."}],"env_vars":[],"auth_type":"none","official":false,"stars":0,"status":"active","source":"mcpservers.org","created_at":"2026-05-25T08:29:58.261468+00:00","updated_at":"2026-05-25T18:21:49.078098+00:00","tags":[],"path":"bwa-burrows-wheeler-aligner"}